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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
239
total RNA-seq
106
ATAC-seq
75
ChIP-seq
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
1
pCHi-C
Assay category
242
Transcription
108
DNA accessibility
75
DNA binding
27
DNA methylation
8
3D chromatin structure
Target of assay
34
histone
34
histone modification
30
control
30
narrow histone mark
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
272
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
377
bam
353
bigWig
241
tsv
55
bed narrowPeak
50
tagAlign
30
fastq
23
bed bedMethyl
23
bigBed bedMethyl
23
bigBed narrowPeak
4
bed bed3+
4
hdf5
Organism
461
Homo sapiens
Biosample type
261
tissue
176
primary cell
24
cell line
Organ
206
liver
24
heart
18
blood
18
bodily fluid
15
connective tissue
14
brain
13
epithelium
12
vasculature
11
blood vessel
10
kidney
9
adipose tissue
8
musculature of body
7
spleen
5
limb
4
pancreas
3
artery
2
pericardium
1
eye
Project
416
AMP
45
T1D
Genome assembly (visualization)
359
hg19
294
GRCh38
Lab
416
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
assay_title!
small RNA-seq
organ_slims!
nerve
BIOSAMPLE
ASSAY
461 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
pCHi-C
tissue
liver
145
50
heart left ventricle
2
2
1
4
spleen
7
gastrocnemius medialis
4
omental fat pad
4
+ See 26 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 49 more…
cell line
GM12878
18
HepG2
5
1
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