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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
15
RRBS
small RNA-seq
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
38
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
3
control
Date released
329
February, 2021
318
November, 2017
314
May, 2020
298
August, 2021
259
May, 2021
204
February, 2023
200
May, 2022
198
June, 2019
187
August, 2017
168
July, 2018
117
October, 2019
87
November, 2018
81
July, 2019
63
December, 2017
60
March, 2020
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
58
bigWig
55
bam
38
tsv
23
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
81
Homo sapiens
Biosample type
53
tissue
28
primary cell
Organ
24
heart
15
connective tissue
14
brain
13
epithelium
12
vasculature
11
blood vessel
10
kidney
adipose tissue
8
musculature of body
7
liver
5
limb
4
pancreas
3
artery
2
pericardium
1
eye
Project
81
AMP
Genome assembly (visualization)
64
hg19
52
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
small RNA-seq
month_released!
May, 2019
organ_slims!
adipose tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
gastrocnemius medialis
4
heart
2
1
right atrium auricular region
2
1
right lobe of liver
2
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
Purkinje cell
1
+ See 19 more…
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