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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
90
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
small RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RNA microarray
Assay category
398
Transcription
90
DNA binding
11
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
22
October, 2019
9
July, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
459
bam
437
bigWig
398
tsv
44
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
509
Homo sapiens
Biosample type
486
tissue
23
primary cell
1
in vitro differentiated cells
Organ
944
pancreas
788
liver
681
connective tissue
524
epithelium
488
adipose tissue
392
heart
353
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
510
AMP
Genome assembly (visualization)
440
hg19
433
GRCh38
Lab
510
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
organ_slims!
pituitary gland
spinal cord
BIOSAMPLE
ASSAY
510 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
FAIRE-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
white adipose tissue
12
+ See 2 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
mesenchymal stem cell of adipose
1
in vitro differentiated cells
white fat cell
1
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