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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 398total RNA-seq
  • 73ChIP-seq
  • 6ATAC-seq
  • 6WGBS
  • small RNA-seq
  • 2DNase-seq
  • 2pCHi-C
  • 1RNA microarray
Assay category
  • 398Transcription
  • 73DNA binding
  • 8DNA accessibility
  • 6DNA methylation
Target of assay
  • 32histone
  • 32histone modification
  • 24control
  • 20broad histone mark
  • 17transcription factor
  • 12narrow histone mark
  • 5RNA binding protein
Date released
  • 386February, 2021
  • 57August, 2017
  • 23October, 2018
  • 9July, 2019
  • 2February, 2020
  • 1August, 2018
  • 1August, 2021
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1March, 2020
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 439bam
  • 422bigWig
  • 398tsv
  • 44fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 8tagAlign
  • 6bed bed3+
  • 3bed broadPeak
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 2bigBed broadPeak
  • 1bedpe bed3+
Organism
  • 487Homo sapiens
Biosample type
  • 486tissue
  • 1in vitro differentiated cells
  • 1primary cell
Organ
  • 944pancreas
  • 788liver
  • 681connective tissue
  • 524epithelium
  • 488adipose tissue
  • 392heart
  • 353kidney
  • 282brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 488AMP
Genome assembly (visualization)
  • 423hg19
  • 421GRCh38
Lab
  • 488AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
assay_title!
  • small RNA-seq
BIOSAMPLE
ASSAY

488 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue3822331
subcutaneous abdominal adipose tissue363
subcutaneous adipose tissue71211
omental fat pad51112
white adipose tissue12
in vitro differentiated cells
white fat cell1
primary cell
mesenchymal stem cell of adipose1
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