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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
31
DNase-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
190
DNA binding
36
DNA accessibility
17
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
29
June, 2019
25
May, 2019
13
October, 2017
12
February, 2020
10
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
210
bigWig
208
bam
202
bed narrowPeak
126
bigBed narrowPeak
99
tagAlign
46
bed broadPeak
37
bigBed broadPeak
33
bed bed3+
19
tsv
16
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
249
Homo sapiens
Biosample type
236
tissue
13
primary cell
Organ
891
pancreas
680
liver
connective tissue
494
epithelium
464
adipose tissue
372
heart
341
kidney
251
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
88
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
249
AMP
Genome assembly (visualization)
209
GRCh38
152
hg19
Lab
249
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
small RNA-seq
organ_slims!
connective tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
249 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
angular gyrus
14
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
astrocyte of the hippocampus
1
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