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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
186
DNA binding
35
DNA accessibility
17
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
control
1
RNA binding protein
1
transcription factor
Date released
79
October, 2019
72
November, 2017
28
June, 2019
25
May, 2019
13
October, 2017
12
February, 2020
9
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
205
bigWig
203
bam
197
bed narrowPeak
121
bigBed narrowPeak
99
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
19
tsv
12
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
243
Homo sapiens
Biosample type
236
tissue
7
primary cell
Organ
891
pancreas
680
liver
646
connective tissue
epithelium
464
adipose tissue
372
heart
341
kidney
251
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
88
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
204
GRCh38
146
hg19
Lab
243
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
small RNA-seq
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
243 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
17
14
1
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
angular gyrus
14
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
See all biosamples
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