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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
213
DNA binding
35
DNA accessibility
20
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
87
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
October, 2017
12
February, 2020
12
July, 2019
3
March, 2020
2
November, 2018
1
February, 2023
Available data
231
bam
209
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
23
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
274
Homo sapiens
Biosample type
263
tissue
11
primary cell
Organ
944
pancreas
788
liver
681
connective tissue
epithelium
488
adipose tissue
392
heart
353
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
274
AMP
Genome assembly (visualization)
207
GRCh38
150
hg19
Lab
274
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
small RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
274 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
Hi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
+ See 78 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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