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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
254
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
254
DNA binding
204
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
218
histone
218
histone modification
113
broad histone mark
105
narrow histone mark
34
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
21
February, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
610
bigWig
605
bam
382
fastq
292
bed narrowPeak
270
tsv
132
zippedFastqFolder
109
bigBed narrowPeak
96
tagAlign
bed broadPeak
49
bigBed broadPeak
34
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
979
Homo sapiens
Biosample type
2313
tissue
979
primary cell
559
cell line
351
in vitro differentiated cells
10
stem cell
Organ
380
epithelium
346
pancreas
33
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
10
brain
10
heart
8
liver
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
506
AMP
276
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
583
hg19
488
GRCh38
Lab
471
AMP-T2D consortium
276
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
month_released!
August, 2021
BIOSAMPLE
ASSAY
979 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
33
4
2
1
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