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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
snATAC-seq
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
144
DNA accessibility
115
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
122
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
5
February, 2021
4
July, 2019
4
October, 2019
3
December, 2019
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
9
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
290
Homo sapiens
Biosample type
290
tissue
36
primary cell
19
cell line
Organ
547
connective tissue
494
pancreas
488
adipose tissue
361
liver
313
heart
290
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
243
AMP
47
KPMP
Genome assembly (visualization)
165
GRCh38
92
hg19
Lab
136
Katalin Susztak, Upenn
107
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
assay_title!
snATAC-seq
snDrop-seq
BIOSAMPLE
ASSAY
290 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RNA microarray
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
27
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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