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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
317
ChIP-seq
165
single cell RNA-seq
135
total RNA-seq
102
ATAC-seq
87
RNA microarray
25
pCHi-C
snATAC-seq
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
317
DNA binding
300
Transcription
107
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
184
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
159
August, 2021
126
August, 2017
93
February, 2021
81
October, 2019
65
May, 2022
58
February, 2023
47
September, 2023
31
March, 2020
31
May, 2020
29
October, 2018
25
February, 2020
25
November, 2017
23
May, 2019
16
April, 2019
16
July, 2019
12
December, 2017
9
October, 2017
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
3
March, 2019
3
May, 2023
2
January, 2018
2
May, 2021
1
January, 2019
1
November, 2019
Available data
204
bam
159
tsv
156
txt
122
tagAlign
101
bed narrowPeak
97
fastq
60
bigWig
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
bigBed narrowPeak
6
csv
5
bed bed3
1
bedpe
Organism
879
Homo sapiens
Biosample type
881
tissue
496
primary cell
198
cell line
129
in vitro differentiated cells
7
stem cell
Organ
128
kidney
123
liver
122
heart
108
pancreas
92
bone element
67
connective tissue
66
adipose tissue
62
brain
53
eye
39
musculature of body
28
blood vessel
28
vasculature
26
limb
15
epithelium
12
nerve
11
artery
9
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
815
AMP
47
KPMP
19
T1D
Genome assembly (visualization)
GRCh38
1753
hg19
Lab
682
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
7
audit script error
Audit category:
1
missing controlled_by
assay_title!
snATAC-seq
assembly!
GRCh38
lab.title!
Stephen Parker, UMich
Xin Sun, UCSD
BIOSAMPLE
ASSAY
881 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
RNA microarray
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
32
46
4
3
1
1
4
kidney
7
64
49
1
1
1
liver
70
1
20
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
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