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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
snATAC-seq
47
WGBS
39
ATAC-seq
3
Hi-C
Assay category
177
Transcription
47
DNA methylation
39
DNA accessibility
3
3D chromatin structure
Date released
113
May, 2022
76
February, 2023
56
September, 2020
18
February, 2021
3
October, 2022
Available data
132
fastq
132
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
266
Homo sapiens
Biosample type
266
primary cell
Organ
142
epithelium
142
pancreas
Project
266
HPAP
Genome assembly (visualization)
GRCh38
3
hg19
Lab
1091
AMP-T2D consortium
266
Klaus Kaestner, Upenn
145
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
audit script error
assay_title!
snATAC-seq
assembly!
GRCh38
organ_slims!
lymph node
BIOSAMPLE
ASSAY
266 results
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Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
Hi-C
primary cell
pancreatic alpha cell
42
31
22
1
Langerhans cell
85
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
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