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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ATAC-seq
66
total RNA-seq
55
ChIP-seq
51
WGBS
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
snATAC-seq
Assay category
72
DNA accessibility
66
Transcription
55
DNA binding
51
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
86
May, 2022
38
February, 2023
29
August, 2017
19
September, 2020
18
May, 2021
11
October, 2018
10
November, 2020
10
October, 2019
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
2
June, 2019
2
March, 2019
2
November, 2019
1
February, 2020
1
March, 2020
1
May, 2019
Available data
108
fastq
80
zippedFastqFolder
54
bam
16
bigWig
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
257
Homo sapiens
Biosample type
161
primary cell
63
tissue
34
cell line
1
in vitro differentiated cells
Organ
259
pancreas
219
kidney
213
epithelium
205
heart
166
liver
122
brain
94
connective tissue
88
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
12
nerve
11
spleen
10
lung
8
embryo
6
blood
6
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
149
HPAP
110
AMP
T1D
Genome assembly (visualization)
hg19
629
GRCh38
Lab
149
Klaus Kaestner, Upenn
89
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
assay_title!
snATAC-seq
assembly!
hg19
award.project!
T1D
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
6
31
pancreatic beta cell
16
11
6
16
pancreatic acinar cell
4
tissue
islet of Langerhans
5
11
19
4
1
body of pancreas
1
9
2
2
pancreas
1
3
2
1
endocrine pancreas
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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