Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
119
ChIP-seq
42
ATAC-seq
4
Hi-C
2
Capture-C
2
pCHi-C
Assay category
127
Transcription
119
DNA binding
42
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
89
May, 2021
48
August, 2017
38
December, 2017
33
August, 2021
31
February, 2018
26
February, 2021
12
February, 2023
8
October, 2019
6
March, 2020
5
November, 2019
Available data
264
bam
254
bigWig
131
bed narrowPeak
127
tsv
118
fastq
25
bed bed3+
17
bigBed narrowPeak
17
tagAlign
7
bed bedgraph
6
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
bed broadPeak
1
bigBed broadPeak
Organism
296
Homo sapiens
Biosample type
1558
tissue
563
primary cell
471
cell line
296
in vitro differentiated cells
3
stem cell
Organ
72
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
296
AMP
Genome assembly (visualization)
296
hg19
264
GRCh38
4
hg18
Lab
284
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
108
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
month_released!
June, 2019
BIOSAMPLE
ASSAY
296 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
8
1
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
+ See 30 more…
See all biosamples
Download