Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
100
single cell RNA-seq
45
ATAC-seq
15
ChIP-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
254
Transcription
45
DNA accessibility
15
DNA binding
10
DNA methylation
9
3D chromatin structure
Target of assay
14
histone
14
histone modification
10
control
8
narrow histone mark
broad histone mark
Date released
90
May, 2020
57
May, 2021
48
July, 2018
43
April, 2018
31
July, 2019
26
September, 2018
10
August, 2017
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2019
3
October, 2022
2
February, 2021
2
October, 2018
1
March, 2020
Available data
478
bigWig
476
bam
252
tsv
193
fastq
bed narrowPeak
81
bigBed narrowPeak
48
tagAlign
34
bed broadPeak
34
bigBed broadPeak
29
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
334
Homo sapiens
Biosample type
976
tissue
334
primary cell
166
in vitro differentiated cells
129
cell line
1
stem cell
Organ
125
epithelium
113
pancreas
18
connective tissue
10
brain
9
kidney
9
vasculature
7
blood vessel
7
liver
5
heart
3
musculature of body
2
adipose tissue
2
artery
2
vein
1
eye
1
pericardium
Project
235
AMP
96
T1D
3
HPAP
Genome assembly (visualization)
334
hg19
271
GRCh38
Lab
230
AMP-T2D consortium
101
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
4
audit script error
Audit category:
8
missing controlled_by
assay_title!
snATAC-seq
files.file_type!
bed narrowPeak
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
334 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
53
2
pancreatic alpha cell
10
12
1
pancreatic beta cell
10
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
+ See 67 more…
See all biosamples
Download