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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
89
total RNA-seq
11
ATAC-seq
4
RRBS
2
DNase-seq
1
FAIRE-seq
Assay category
137
DNA binding
89
Transcription
14
DNA accessibility
4
DNA methylation
Target of assay
89
histone modification
88
histone
45
narrow histone mark
45
transcription factor
42
broad histone mark
6
RNA binding protein
3
control
2
chromatin remodeller
Date released
574
February, 2021
316
May, 2021
260
May, 2020
235
August, 2017
211
November, 2017
208
October, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
65
April, 2019
62
November, 2018
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
38
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
23
June, 2019
9
October, 2017
7
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
283
bigWig
268
fastq
264
bam
154
bed narrowPeak
89
tsv
48
bigBed narrowPeak
bed broadPeak
44
tagAlign
33
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
244
Homo sapiens
Biosample type
163
tissue
48
in vitro differentiated cells
33
primary cell
Organ
151
pancreas
63
connective tissue
20
liver
17
epithelium
15
adipose tissue
3
brain
2
musculature of body
1
spleen
Project
244
AMP
Genome assembly (visualization)
244
hg19
240
GRCh38
Lab
244
AMP-T2D consortium
Audit category:
40
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
21
89
1
1
liver
18
1
white adipose tissue
12
pancreas
6
body of pancreas
4
+ See 7 more…
in vitro differentiated cells
adipocyte
48
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
skeletal muscle myoblast
2
1
1
pancreatic acinar cell
1
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