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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
2
pCHi-C
Assay category
12
DNA accessibility
Date released
10
February, 2023
2
February, 2021
2
March, 2020
Available data
2966
bigWig
2962
bam
1548
bed narrowPeak
1402
tsv
972
fastq
929
bigBed narrowPeak
293
bed broadPeak
257
bigBed broadPeak
249
bed bed3+
238
tagAlign
20
bedpe bed3+
20
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
txt
2
ibed
1
tagAlign bed3+
Organism
14
Homo sapiens
Biosample type
7
in vitro differentiated cells
5
tissue
1
cell line
1
primary cell
Organ
6
connective tissue
4
bone element
4
skeleton
1
brain
1
liver
Project
14
AMP
Genome assembly (visualization)
14
hg19
2
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
assay_title!
snATAC-seq
lab.title!
Bing Ren, UCSD
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
14 results
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ATAC-seq
pCHi-C
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
tissue
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
pubis
1
cell line
HepG2
1
primary cell
osteoblast
1
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