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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
209
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
47
WGBS
snATAC-seq
27
DNase-seq
17
pCHi-C
9
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
224
DNA accessibility
209
DNA binding
57
DNA methylation
5
3D chromatin structure
Target of assay
184
histone
184
histone modification
97
broad histone mark
87
narrow histone mark
20
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
43
April, 2018
31
July, 2019
21
February, 2021
13
October, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
552
bigWig
531
bam
324
fastq
270
tsv
249
bed narrowPeak
132
zippedFastqFolder
88
tagAlign
77
bigBed narrowPeak
35
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
1
bed bed3
1
hic
Organism
948
Homo sapiens
Biosample type
2458
tissue
948
primary cell
662
cell line
324
in vitro differentiated cells
10
stem cell
Organ
373
epithelium
302
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
vein
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
478
AMP
273
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
561
hg19
482
GRCh38
Lab
443
AMP-T2D consortium
273
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
audit script error
Audit category:
32
missing controlled_by
assay_title!
snATAC-seq
audit.ERROR.category!
audit script error
month_released!
August, 2017
organ_slims!
vein
BIOSAMPLE
ASSAY
948 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
34
12
31
Langerhans cell
85
pancreatic beta cell
21
22
12
16
CD8-positive, alpha-beta T cell
4
33
2
1
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