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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
snATAC-seq
1
Hi-C
Assay category
80
DNA accessibility
60
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
683
February, 2021
399
May, 2021
370
August, 2017
341
May, 2020
336
November, 2017
313
August, 2021
304
October, 2019
203
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
19
October, 2017
15
May, 2023
15
November, 2020
11
September, 2017
9
April, 2020
8
January, 2018
7
August, 2020
6
December, 2019
5
March, 2023
4
August, 2018
4
March, 2019
3
June, 2018
1
October, 2022
Available data
113
zippedFastqFolder
38
bed narrowPeak
25
bam
25
fastq
20
bigWig
6
txt
bed broadPeak
1
bedpe
1
hic
Organism
182
Homo sapiens
Biosample type
113
primary cell
69
tissue
Organ
108
pancreas
80
epithelium
40
liver
1
musculature of body
Project
113
HPAP
69
AMP
Genome assembly (visualization)
41
hg19
2
GRCh38
Lab
113
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
AMP-T2D consortium
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
assay_title!
snATAC-seq
audit.ERROR.category!
audit script error
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
Hi-C
primary cell
pancreatic alpha cell
22
25
Langerhans cell
33
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
21
6
1
skeletal muscle tissue
1
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