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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
42
single cell RNA-seq
34
ChIP-seq
1
Hi-C
Assay category
162
Transcription
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
560
February, 2021
411
August, 2017
404
November, 2017
333
May, 2020
310
August, 2021
309
May, 2021
291
October, 2019
192
February, 2023
192
June, 2019
178
May, 2022
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
15
May, 2023
11
September, 2017
10
November, 2020
9
April, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
Available data
192
bam
188
bigWig
158
tsv
79
fastq
30
bed narrowPeak
30
bigBed narrowPeak
Organism
197
Homo sapiens
Biosample type
127
tissue
42
primary cell
28
cell line
Organ
152
pancreas
32
epithelium
27
blood
27
bodily fluid
7
spleen
2
connective tissue
1
liver
Project
197
AMP
Genome assembly (visualization)
188
GRCh38
188
hg19
Lab
197
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
inconsistent control
assay_title!
snATAC-seq
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
other context
BIOSAMPLE
ASSAY
197 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
120
spleen
7
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic cell
3
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cell line
GM12878
27
HepG2
1
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