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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
80
ChIP-seq
48
single cell RNA-seq
3
Hi-C
1
MPRA
Assay category
168
Transcription
80
DNA binding
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
688
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
314
October, 2019
313
August, 2021
218
June, 2019
203
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
Available data
243
bam
229
bigWig
164
tsv
65
bed narrowPeak
64
bigBed narrowPeak
50
fastq
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
251
Homo sapiens
Biosample type
200
tissue
51
primary cell
1
cell line
Organ
160
pancreas
57
heart
36
epithelium
23
kidney
2
connective tissue
Project
249
AMP
3
HPAP
Genome assembly (visualization)
232
hg19
228
GRCh38
Lab
249
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
3
audit script error
assay_title!
snATAC-seq
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
252 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
MPRA
tissue
islet of Langerhans
120
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
primary cell
pancreatic beta cell
9
1
pancreatic alpha cell
7
1
pancreatic acinar cell
5
1
pancreatic delta cell
4
pancreatic cell
3
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cell line
MIN6
1
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