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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
385
ChIP-seq
77
ATAC-seq
41
WGBS
snATAC-seq
34
single cell RNA-seq
26
total RNA-seq
Assay category
385
DNA binding
77
DNA accessibility
60
Transcription
41
DNA methylation
Target of assay
234
transcription factor
77
histone
77
histone modification
71
control
65
recombinant protein
44
broad histone mark
33
narrow histone mark
32
RNA binding protein
9
chromatin remodeller
2
other context
2
other post-translational modification
Date released
688
February, 2021
399
May, 2021
395
August, 2017
385
November, 2017
341
May, 2020
314
October, 2019
313
August, 2021
218
June, 2019
203
February, 2023
178
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
83
December, 2017
83
November, 2018
80
April, 2019
75
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
0
January, 2021
Available data
395
bam
333
bigWig
332
bed narrowPeak
327
fastq
293
bigBed narrowPeak
113
zippedFastqFolder
67
tagAlign
57
bed broadPeak
51
bigBed broadPeak
6
txt
3
tar
Organism
563
Homo sapiens
Biosample type
294
cell line
147
tissue
122
primary cell
Organ
334
liver
104
pancreas
91
brain
86
epithelium
6
vasculature
3
blood vessel
1
musculature of body
Project
450
AMP
113
HPAP
Genome assembly (visualization)
298
hg19
263
GRCh38
Lab
386
AMP-T2D consortium
113
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
assay_title!
snATAC-seq
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
563 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
cell line
HepG2
294
tissue
liver
20
20
islet of Langerhans
18
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 4 more…
primary cell
pancreatic alpha cell
22
25
Langerhans cell
33
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
3
+ See 2 more…
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