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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
32
DNase-seq
6
Hi-C
5
total RNA-seq
4
RRBS
2
pCHi-C
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
small RNA-seq
snATAC-seq
Assay category
33
DNA accessibility
33
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
29
histone
29
histone modification
16
broad histone mark
13
narrow histone mark
4
control
Date released
32
June, 2019
26
August, 2017
7
July, 2019
7
May, 2019
6
March, 2020
4
October, 2019
2
February, 2020
1
January, 2018
1
May, 2022
Available data
57
bigWig
51
bed narrowPeak
45
bed broadPeak
44
bam
38
bigBed narrowPeak
32
bed bed3+
32
bigBed broadPeak
15
tagAlign
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
86
Homo sapiens
Biosample type
86
tissue
14
primary cell
Organ
547
connective tissue
494
pancreas
488
adipose tissue
361
liver
313
heart
293
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
60
hg19
42
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
snATAC-seq
award.project!
LungMap
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
ATAC-seq
WGBS
single cell RNA-seq
small RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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