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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
195
ChIP-seq
187
single cell RNA-seq
151
total RNA-seq
snATAC-seq
47
WGBS
31
DNase-seq
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
340
Transcription
232
DNA accessibility
195
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
113
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
55
May, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
21
February, 2021
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
433
bigWig
429
bam
382
fastq
211
bed narrowPeak
174
tsv
132
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
836
Homo sapiens
Biosample type
2728
tissue
836
primary cell
645
cell line
365
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
559
AMP
276
HPAP
T1D
1
ITG
Genome assembly (visualization)
448
hg19
356
GRCh38
Lab
524
AMP-T2D consortium
276
Klaus Kaestner, Upenn
35
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
award.project!
T1D
organ_slims!
embryo
BIOSAMPLE
ASSAY
836 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
12
52
31
1
pancreatic beta cell
23
13
12
21
16
1
Langerhans cell
85
exocrine cell
39
CD8-positive, alpha-beta T cell
2
33
2
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