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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
Assay category
39
DNA binding
34
DNA accessibility
8
Transcription
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
3
March, 2020
2
February, 2020
1
January, 2018
May, 2022
Available data
68
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
Organism
92
Homo sapiens
Biosample type
78
tissue
14
primary cell
Organ
800
pancreas
749
liver
682
connective tissue
490
adipose tissue
435
epithelium
390
heart
348
kidney
286
brain
234
vasculature
228
blood vessel
158
bone element
141
artery
122
limb
92
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
70
hg19
53
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
snATAC-seq
award.project!
T1D
files.file_type!
bedpe bed3+
month_released!
May, 2022
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
WGBS
pCHi-C
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
1
+ See 3 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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