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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
52
single cell RNA-seq
snATAC-seq
10
ATAC-seq
6
WGBS
3
Hi-C
Assay category
144
Transcription
10
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
May, 2022
76
February, 2023
59
September, 2020
18
February, 2021
7
August, 2020
3
October, 2022
Available data
142
fastq
19
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
163
Homo sapiens
Biosample type
163
primary cell
Organ
72
epithelium
72
pancreas
Project
163
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3828
AMP-T2D consortium
163
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
83
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
assay_title!
snATAC-seq
award.project!
T1D
month_released!
May, 2022
September, 2018
BIOSAMPLE
ASSAY
163 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
42
7
6
1
Langerhans cell
52
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
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