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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 105total RNA-seq
  • 88ChIP-seq
  • snATAC-seq
  • 17pCHi-C
  • 11ATAC-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • 105Transcription
  • 88DNA binding
  • 11DNA accessibility
Target of assay
  • 88histone
  • 88histone modification
  • 44broad histone mark
  • 44narrow histone mark
Date released
  • 153May, 2021
  • 45May, 2020
  • 21February, 2023
  • 7March, 2020
Available data
  • 186bam
  • 186bigWig
  • 98tsv
  • 88bed narrowPeak
  • 84tagAlign
Organism
  • 226Homo sapiens
Biosample type
  • 196primary cell
  • 21tissue
  • 9cell line
Organ
  • 24pancreas
  • 4epithelium
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 4284AMP
  • 276HPAP
  • 226T1D
  • 47KPMP
  • 9LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 186GRCh38
  • 186hg19
Lab
  • 218Kyle Gaulton, UCSD
  • 8AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
assay_title!
  • snATAC-seq
BIOSAMPLE
ASSAY

226 results

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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte53841
B cell21
CD8-positive, alpha-beta T cell21
naive B cel21
naive thymus-derived CD8-positive, alpha-beta T cell21
tissue
islet of Langerhans7211
thymus1
cell line
EndoC_BH12232
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