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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
866
ChIP-seq
Assay category
866
DNA binding
Target of assay
867
histone modification
866
histone
440
narrow histone mark
426
broad histone mark
223
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
189
October, 2019
161
August, 2017
118
May, 2021
92
May, 2019
73
November, 2017
60
April, 2019
35
May, 2024
32
September, 2018
30
October, 2018
27
May, 2020
19
June, 2019
12
October, 2017
7
December, 2017
6
January, 2019
3
August, 2021
2
March, 2020
Available data
753
bigWig
737
bed narrowPeak
670
bam
359
bigBed narrowPeak
284
tagAlign
148
fastq
51
bed broadPeak
17
bed bed3+
16
bigBed broadPeak
1
tagAlign bed3+
Organism
860
Homo sapiens
Biosample type
627
tissue
237
primary cell
in vitro differentiated cells
cell line
2
stem cell
Organ
187
brain
131
pancreas
97
heart
72
liver
71
vasculature
70
blood vessel
66
epithelium
49
limb
41
connective tissue
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
6
spleen
4
gonad
4
ovary
3
eye
1
lymph node
1
pituitary gland
Project
780
AMP
86
T1D
Genome assembly (visualization)
693
GRCh38
669
hg19
Lab
717
AMP-T2D consortium
114
Kyle Gaulton, UCSD
35
Patrick T. Ellinor, Broad
Audit category:
19
inconsistent ontology term
Audit category:
52
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
biosample_type!
cell line
in vitro differentiated cells
month_released!
August, 2022
BIOSAMPLE
ASSAY
866 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
51
left cardiac atrium
35
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
+ See 100 more…
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
+ See 18 more…
stem cell
hESC
2
See all biosamples
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