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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
34
ChIP-seq
17
Hi-C
2
pCHi-C
2
total RNA-seq
snATAC-seq
Assay category
193
DNA accessibility
34
DNA binding
17
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
180
June, 2019
26
August, 2017
9
November, 2018
6
March, 2020
5
August, 2021
5
October, 2019
3
December, 2017
3
October, 2022
2
February, 2021
2
July, 2019
2
May, 2021
2
November, 2019
2
September, 2017
1
November, 2020
Available data
2916
bam
2755
bigWig
1552
bed narrowPeak
1401
tsv
1184
fastq
942
bigBed narrowPeak
352
tagAlign
304
bed broadPeak
267
bigBed broadPeak
234
bed bed3+
157
txt
132
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
16
hic
14
bedpe bed3+
8
csv
7
bed bed3
3
cool
3
hdf5
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
248
Homo sapiens
Biosample type
208
tissue
in vitro differentiated cells
32
primary cell
5
cell line
3
stem cell
Organ
78
kidney
36
limb
36
pancreas
35
brain
35
musculature of body
33
heart
26
epithelium
18
ureter
15
liver
vasculature
14
connective tissue
13
blood vessel
6
adipose tissue
4
artery
4
eye
3
vein
2
nerve
1
spleen
Project
245
AMP
3
HPAP
Genome assembly (visualization)
228
GRCh38
225
hg19
Lab
241
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
3
audit script error
Audit category:
14
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
biosample_type!
in vitro differentiated cells
organ_slims!
vasculature
BIOSAMPLE
ASSAY
248 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
tissue
islet of Langerhans
21
2
heart
18
1
muscle of arm
17
brain
14
kidney
13
+ See 39 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain pericyte
1
1
+ See 16 more…
cell line
HepG2
1
1
Panc1
1
1
EndoC_BH1
1
stem cell
hESC
3
See all biosamples
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