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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
252
ChIP-seq
Assay category
252
DNA binding
Target of assay
177
histone
177
histone modification
107
narrow histone mark
70
broad histone mark
66
control
9
transcription factor
Date released
61
November, 2017
50
May, 2020
49
October, 2019
47
August, 2017
20
August, 2021
11
October, 2017
8
February, 2021
6
May, 2021
Available data
2783
bam
2556
bigWig
1522
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
bed broadPeak
236
bigBed broadPeak
235
bed bed3+
160
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
0
cool
Organism
251
Homo sapiens
Biosample type
203
tissue
primary cell
40
in vitro differentiated cells
9
cell line
Organ
109
brain
71
liver
21
connective tissue
7
adipose tissue
7
pancreas
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
2
musculature of body
1
pituitary gland
Project
252
AMP
Genome assembly (visualization)
125
GRCh38
93
hg19
Lab
252
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
missing controlled_by
assay_title!
snATAC-seq
biosample_type!
primary cell
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ChIP-seq
tissue
liver
70
layer of hippocampus
15
substantia nigra
15
caudate nucleus
14
cingulate gyrus
12
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
HepG2
1
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