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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1162
total RNA-seq
996
ChIP-seq
301
ATAC-seq
181
single cell RNA-seq
147
DNase-seq
87
RNA microarray
29
pCHi-C
snATAC-seq
26
WGBS
15
small RNA-seq
14
Hi-C
7
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1358
Transcription
996
DNA binding
452
DNA accessibility
33
DNA methylation
14
3D chromatin structure
Target of assay
655
histone modification
654
histone
347
narrow histone mark
306
broad histone mark
206
control
137
transcription factor
35
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
571
February, 2021
326
August, 2017
265
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
131
June, 2019
120
July, 2018
109
February, 2023
108
May, 2019
91
December, 2017
82
November, 2017
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
47
September, 2023
45
November, 2019
43
March, 2020
40
May, 2024
39
February, 2018
26
November, 2018
23
February, 2020
23
October, 2017
15
May, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
December, 2019
5
January, 2018
5
March, 2019
4
November, 2020
1
August, 2018
Available data
2075
bam
1909
bigWig
1200
tsv
1000
bed narrowPeak
516
fastq
476
bigBed narrowPeak
263
tagAlign
197
bed bed3+
169
bed broadPeak
159
txt
145
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
15
bedpe bed3+
13
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2974
Homo sapiens
Biosample type
2588
tissue
1018
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
497
pancreas
489
adipose tissue
376
liver
270
kidney
265
brain
257
heart
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2905
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
2018
GRCh38
1926
hg19
4
hg18
Lab
2602
AMP-T2D consortium
136
Katalin Susztak, Upenn
89
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
205
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
month_released!
April, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2982 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
71
68
6
1
4
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
4
75
64
13
1
1
1
bone element
84
+ See 168 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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