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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
132
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
195
DNA binding
134
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
chromatin remodeller
Date released
132
May, 2021
66
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
288
bam
253
bigWig
138
fastq
131
tsv
127
bed narrowPeak
40
tagAlign
21
bed bed3+
16
bigBed narrowPeak
7
bedpe bed3+
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
375
Homo sapiens
Biosample type
2654
tissue
943
primary cell
625
cell line
375
in vitro differentiated cells
10
stem cell
Organ
82
connective tissue
29
embryo
23
epithelium
14
liver
3
pancreas
1
adipose tissue
1
heart
Project
375
AMP
Genome assembly (visualization)
282
hg19
262
GRCh38
4
hg18
Lab
324
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
snATAC-seq
files.file_type!
vcf
month_released!
February, 2023
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
65
4
7
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
18
4
1
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