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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
110
ChIP-seq
21
ATAC-seq
2
pCHi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
129
Transcription
110
DNA binding
22
DNA accessibility
Target of assay
78
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
43
August, 2017
34
December, 2017
32
August, 2021
31
February, 2018
22
February, 2021
5
November, 2019
4
March, 2020
4
October, 2019
2
December, 2019
2
February, 2023
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
263
Homo sapiens
Biosample type
2015
tissue
563
primary cell
523
cell line
263
in vitro differentiated cells
6
stem cell
Organ
50
connective tissue
20
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
263
AMP
Genome assembly (visualization)
258
hg19
255
GRCh38
Lab
259
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
103
inconsistent ontology term
2
audit script error
Audit category:
17
inconsistent control read length
assay_title!
snATAC-seq
month_released!
October, 2018
BIOSAMPLE
ASSAY
263 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
42
1
1
neural progenitor cell
7
13
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
12
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