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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
29
DNase-seq
20
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
Assay category
438
Transcription
265
DNA binding
229
DNA accessibility
58
DNA methylation
8
3D chromatin structure
Target of assay
224
histone
224
histone modification
114
broad histone mark
110
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
43
April, 2018
31
July, 2019
21
February, 2021
13
October, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
4
March, 2020
3
August, 2018
3
December, 2017
3
June, 2018
3
March, 2023
3
October, 2022
2
October, 2018
1
January, 2018
1
November, 2018
Available data
601
bigWig
592
bam
386
fastq
284
bed narrowPeak
274
tsv
132
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
38
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
1017
Homo sapiens
Biosample type
2749
tissue
1009
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
40
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
bone element
bone marrow
1
pericardium
Project
545
AMP
276
HPAP
195
T1D
2
community
1
ITG
Genome assembly (visualization)
614
hg19
527
GRCh38
1
hg18
Lab
510
AMP-T2D consortium
276
Klaus Kaestner, Upenn
230
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
1
ITG
Audit category:
55
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
7
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
organ_slims!
bone marrow
vein
BIOSAMPLE
ASSAY
1019 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
GRO-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
pancreatic beta cell
13
21
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 91 more…
stem cell
hESC
3
1
SB Ad3.1
1
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
+ See 1 more…
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