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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
227
ChIP-seq
199
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
227
DNA binding
203
DNA accessibility
58
DNA methylation
10
3D chromatin structure
Target of assay
202
histone
202
histone modification
106
broad histone mark
96
narrow histone mark
27
control
1
RNA binding protein
1
transcription factor
Date released
206
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
June, 2019
30
October, 2019
20
February, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
566
bigWig
554
bam
382
fastq
270
tsv
248
bed narrowPeak
132
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
bed bed3
1
tar
Organism
951
Homo sapiens
Biosample type
2531
tissue
951
primary cell
602
cell line
388
in vitro differentiated cells
10
stem cell
Organ
378
epithelium
346
pancreas
25
vasculature
23
blood vessel
23
kidney
20
connective tissue
18
vein
12
liver
10
brain
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
478
AMP
276
HPAP
196
T1D
1
ITG
Genome assembly (visualization)
562
hg19
467
GRCh38
Lab
443
AMP-T2D consortium
276
Klaus Kaestner, Upenn
231
Kyle Gaulton, UCSD
1
ITG
Audit category:
29
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
files.file_type!
bed bed3
bed broadPeak
month_released!
June, 2019
BIOSAMPLE
ASSAY
951 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
Langerhans cell
85
CD8-positive, alpha-beta T cell
4
33
2
1
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