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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ATAC-seq
187
single cell RNA-seq
149
total RNA-seq
141
ChIP-seq
snATAC-seq
47
WGBS
10
Hi-C
10
RRBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
338
Transcription
203
DNA accessibility
141
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
107
histone
107
histone modification
57
narrow histone mark
50
broad histone mark
32
control
5
RNA binding protein
5
transcription factor
Date released
113
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
48
July, 2018
45
August, 2017
43
April, 2018
31
July, 2019
31
June, 2019
30
October, 2019
20
February, 2021
20
May, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
429
bam
398
bigWig
382
fastq
181
bed narrowPeak
174
tsv
132
zippedFastqFolder
109
bigBed narrowPeak
49
bed broadPeak
bigBed broadPeak
35
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
bed bed3
1
tar
Organism
751
Homo sapiens
Biosample type
2526
tissue
751
primary cell
597
cell line
341
in vitro differentiated cells
10
stem cell
Organ
384
epithelium
346
pancreas
31
connective tissue
26
kidney
25
vasculature
23
blood vessel
18
vein
13
musculature of body
12
liver
10
brain
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
474
AMP
276
HPAP
1
ITG
Genome assembly (visualization)
370
hg19
310
GRCh38
Lab
474
AMP-T2D consortium
276
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
46
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
files.file_type!
bed bed3
bigBed broadPeak
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
751 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
WGBS
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
1
pancreatic beta cell
23
12
21
13
16
1
Langerhans cell
85
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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