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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
187
single cell RNA-seq
149
total RNA-seq
145
ChIP-seq
snATAC-seq
47
WGBS
29
DNase-seq
8
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
338
Transcription
229
DNA accessibility
145
DNA binding
48
DNA methylation
8
3D chromatin structure
Target of assay
108
histone
108
histone modification
59
narrow histone mark
49
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
113
May, 2022
102
May, 2020
88
February, 2023
73
September, 2018
59
September, 2020
58
August, 2017
55
June, 2019
48
July, 2018
43
April, 2018
22
July, 2019
21
February, 2021
20
May, 2021
13
October, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
409
bam
383
bigWig
382
fastq
174
tsv
168
bed narrowPeak
132
zippedFastqFolder
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
769
Homo sapiens
Biosample type
2682
tissue
769
primary cell
656
cell line
347
in vitro differentiated cells
10
stem cell
Organ
400
epithelium
346
pancreas
37
connective tissue
36
vasculature
33
kidney
31
blood vessel
vein
20
brain
13
liver
13
musculature of body
12
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
492
AMP
276
HPAP
1
ITG
Genome assembly (visualization)
386
hg19
344
GRCh38
Lab
492
AMP-T2D consortium
276
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
47
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
snATAC-seq
files.file_type!
bigBed bedMethyl
lab.title!
Kyle Gaulton, UCSD
organ_slims!
vein
BIOSAMPLE
ASSAY
769 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
WGBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
1
pancreatic beta cell
23
12
21
13
16
1
Langerhans cell
85
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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