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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
DNase-seq
19
ChIP-seq
Assay category
25
DNA accessibility
19
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
23
June, 2019
14
August, 2017
6
November, 2017
1
November, 2020
Available data
595
bigWig
585
bam
382
fastq
279
bed narrowPeak
270
tsv
132
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
34
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
44
Homo sapiens
Biosample type
173
tissue
59
cell line
44
primary cell
1
in vitro differentiated cells
Organ
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
vein
3
heart
2
liver
eye
1
musculature of body
Project
44
AMP
Genome assembly (visualization)
42
GRCh38
37
hg19
Lab
44
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_title!
snATAC-seq
organ_slims!
eye
vein
BIOSAMPLE
ASSAY
44 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
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