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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
144
total RNA-seq
100
single cell RNA-seq
12
ATAC-seq
6
WGBS
2
small RNA-seq
Assay category
246
Transcription
12
DNA accessibility
6
DNA methylation
Target of assay
3
control
Date released
52
May, 2021
48
July, 2018
45
May, 2020
43
April, 2018
26
September, 2018
14
July, 2019
12
February, 2023
7
February, 2021
5
December, 2019
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
Available data
483
bam
472
bigWig
349
fastq
264
tsv
166
bed narrowPeak
132
zippedFastqFolder
74
bigBed narrowPeak
49
tagAlign
31
bed broadPeak
31
bigBed broadPeak
26
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
264
Homo sapiens
Biosample type
1064
tissue
264
primary cell
131
in vitro differentiated cells
113
cell line
4
stem cell
Organ
116
epithelium
108
pancreas
15
connective tissue
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
162
AMP
96
T1D
6
HPAP
Genome assembly (visualization)
246
GRCh38
246
hg19
Lab
162
AMP-T2D consortium
96
Kyle Gaulton, UCSD
6
Klaus Kaestner, Upenn
Audit category:
17
inconsistent ontology term
assay_title!
snATAC-seq
organ_slims!
kidney
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
264 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
small RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
10
12
6
pancreatic beta cell
10
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
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