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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
92
total RNA-seq
72
ATAC-seq
47
WGBS
37
single cell RNA-seq
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
129
Transcription
92
DNA binding
91
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
12
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
209
fastq
208
bam
197
bigWig
106
bed narrowPeak
82
tsv
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
372
Homo sapiens
Biosample type
372
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
373
epithelium
313
pancreas
37
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
220
AMP
152
HPAP
Genome assembly (visualization)
193
hg19
191
GRCh38
Lab
220
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
snATAC-seq
month_released!
April, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
372 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
52
35
31
9
1
pancreatic beta cell
13
21
23
16
9
1
pancreatic acinar cell
8
4
9
6
1
pancreatic ductal cell
13
4
4
4
endothelial cell of umbilical vein
17
2
2
1
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