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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
243
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
159
ChIP-seq
snATAC-seq
47
WGBS
28
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
432
Transcription
229
DNA accessibility
159
DNA binding
57
DNA methylation
10
3D chromatin structure
Target of assay
232
histone
232
histone modification
121
broad histone mark
narrow histone mark
32
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
113
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
July, 2018
43
April, 2018
38
June, 2019
37
August, 2017
26
July, 2019
25
October, 2019
21
February, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
494
bam
492
bigWig
342
fastq
266
tsv
186
bed narrowPeak
132
zippedFastqFolder
79
bigBed narrowPeak
51
tagAlign
38
bed broadPeak
38
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
904
Homo sapiens
Biosample type
2019
tissue
904
primary cell
535
cell line
303
in vitro differentiated cells
9
stem cell
Organ
369
epithelium
315
pancreas
35
connective tissue
31
kidney
29
vasculature
24
blood vessel
18
brain
16
vein
heart
10
liver
10
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
471
AMP
276
HPAP
156
T1D
1
ITG
Genome assembly (visualization)
507
hg19
425
GRCh38
Lab
446
AMP-T2D consortium
276
Klaus Kaestner, Upenn
181
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
assay_title!
snATAC-seq
month_released!
August, 2021
organ_slims!
heart
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
904 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
monocyte
54
15
44
1
1
Langerhans cell
85
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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