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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
303
ChIP-seq
180
single cell RNA-seq
87
RNA microarray
50
ATAC-seq
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
303
DNA binding
51
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
184
control
102
histone
102
histone modification
57
narrow histone mark
45
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
159
August, 2021
120
July, 2018
91
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
30
February, 2023
29
October, 2018
27
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
15
April, 2019
15
May, 2023
12
December, 2017
October, 2017
9
April, 2020
9
November, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
January, 2019
Available data
1892
bam
1758
bigWig
1076
tsv
bed narrowPeak
555
bigBed narrowPeak
360
fastq
224
tagAlign
209
bed broadPeak
204
bed bed3+
176
bigBed broadPeak
156
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1752
Homo sapiens
Biosample type
1754
tissue
737
primary cell
262
in vitro differentiated cells
cell line
8
stem cell
Organ
534
connective tissue
475
adipose tissue
370
pancreas
248
liver
150
bone element
140
heart
140
kidney
63
brain
33
blood vessel
33
vasculature
30
limb
30
musculature of body
26
eye
16
nerve
11
artery
11
spleen
10
lung
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1679
AMP
47
KPMP
19
T1D
9
LungMap
Genome assembly (visualization)
976
hg19
974
GRCh38
Lab
1571
AMP-T2D consortium
72
Katalin Susztak, Upenn
47
KPMP
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
87
inconsistent ontology term
7
audit script error
Audit category:
21
missing controlled_by
assay_title!
snATAC-seq
biosample_type!
cell line
files.file_type!
bed narrowPeak
month_released!
October, 2017
BIOSAMPLE
ASSAY
1754 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
51
6
30
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
63
1
3
1
1
1
1
kidney
49
7
64
11
1
1
bone element
84
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