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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
ChIP-seq
576
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
86
RNA microarray
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
833
DNA binding
770
Transcription
260
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
595
histone modification
594
histone
311
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
236
October, 2019
227
August, 2017
222
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
101
February, 2021
92
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
65
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
17
November, 2018
14
May, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
January, 2018
Available data
1409
bam
1291
bigWig
971
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
198
bed bed3+
bigBed broadPeak
156
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2021
Homo sapiens
Biosample type
2028
tissue
950
primary cell
603
cell line
297
in vitro differentiated cells
stem cell
Organ
connective tissue
488
pancreas
486
adipose tissue
358
liver
286
heart
238
brain
225
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1951
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1205
GRCh38
1114
hg19
Lab
1702
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
biosample_type!
stem cell
files.file_type!
bigBed broadPeak
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2028 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
70
292
68
6
4
3
1
1
4
1
liver
145
167
20
1
1
3
1
1
1
kidney
27
49
75
64
1
1
1
bone element
84
heart left ventricle
35
3
2
18
1
4
1
1
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