Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
840
total RNA-seq
562
ChIP-seq
218
ATAC-seq
179
single cell RNA-seq
170
DNase-seq
87
RNA microarray
snATAC-seq
23
WGBS
20
pCHi-C
14
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1032
Transcription
562
DNA binding
392
DNA accessibility
33
DNA methylation
14
3D chromatin structure
Target of assay
395
histone
395
histone modification
242
broad histone mark
153
narrow histone mark
114
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
October, 2019
230
August, 2017
223
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
88
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
25
May, 2022
24
February, 2020
23
October, 2017
19
November, 2018
15
May, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
Available data
1439
bam
1353
bigWig
915
tsv
725
bed narrowPeak
465
bigBed narrowPeak
294
fastq
206
bed broadPeak
194
bed bed3+
169
bigBed broadPeak
156
txt
119
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
9
hic
8
bedpe bed3+
bed bed3
5
csv
1
bedpe
Organism
2139
Homo sapiens
Biosample type
2147
tissue
984
primary cell
366
in vitro differentiated cells
231
cell line
10
stem cell
Organ
545
connective tissue
491
pancreas
487
adipose tissue
liver
305
heart
289
kidney
178
brain
154
bone element
107
blood vessel
107
vasculature
81
musculature of body
53
limb
47
artery
35
eye
25
spleen
18
ureter
15
epithelium
12
skeleton
10
lung
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2070
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1466
GRCh38
1324
hg19
Lab
1861
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
snATAC-seq
files.file_type!
bed bed3
month_released!
October, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
2147 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
278
50
55
6
1
3
1
1
4
adipose tissue
382
2
2
3
1
kidney
49
23
75
64
13
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
4
1
1
1
+ See 109 more…
See all biosamples
Download