Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
893
total RNA-seq
722
ChIP-seq
181
ATAC-seq
169
single cell RNA-seq
87
RNA microarray
25
pCHi-C
snATAC-seq
18
WGBS
16
small RNA-seq
15
Hi-C
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1078
Transcription
722
DNA binding
184
DNA accessibility
24
DNA methylation
15
3D chromatin structure
Target of assay
495
histone
495
histone modification
269
narrow histone mark
226
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
93
February, 2023
80
April, 2019
77
July, 2019
76
November, 2017
74
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
October, 2017
17
November, 2018
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
May, 2023
Available data
1737
bam
1594
bigWig
987
tsv
854
bed narrowPeak
539
bigBed narrowPeak
202
fastq
bed broadPeak
179
tagAlign
178
bed bed3+
176
bigBed broadPeak
99
txt
20
bed bedMethyl
20
bigBed bedMethyl
10
bedpe bed3+
10
hic
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2141
Homo sapiens
Biosample type
2142
tissue
938
primary cell
603
cell line
326
in vitro differentiated cells
10
stem cell
Organ
488
connective tissue
429
adipose tissue
339
pancreas
304
liver
286
heart
229
brain
158
bone element
128
blood vessel
128
vasculature
89
kidney
86
limb
69
artery
53
eye
41
nerve
24
spleen
23
musculature of body
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2065
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1441
GRCh38
1403
hg19
Lab
1954
AMP-T2D consortium
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent control read length
assay_title!
snATAC-seq
files.file_type!
bed broadPeak
lab.title!
Katalin Susztak, Upenn
month_released!
August, 2017
BIOSAMPLE
ASSAY
2142 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
203
29
66
6
4
3
1
4
liver
167
97
20
1
1
1
1
bone element
84
kidney
27
53
1
1
+ See 157 more…
See all biosamples
Download