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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
16
DNA binding
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
16
control
Date released
11
May, 2019
6
August, 2021
5
July, 2019
5
October, 2019
3
February, 2020
3
March, 2020
Available data
bed narrowPeak
87
bam
70
bigWig
62
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
33
Homo sapiens
Biosample type
54
cell line
33
tissue
16
primary cell
Organ
534
connective tissue
475
adipose tissue
365
pancreas
248
liver
150
bone element
140
heart
140
kidney
73
brain
33
blood vessel
33
vasculature
30
limb
30
musculature of body
26
eye
16
nerve
11
artery
11
spleen
10
lung
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
5
GRCh38
5
hg19
Lab
33
AMP-T2D consortium
assay_title!
snATAC-seq
files.file_type!
bed narrowPeak
month_released!
April, 2018
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
aorta
2
1
4
2
1
1
thoracic aorta
4
2
tibial artery
5
1
ascending aorta
3
2
coronary artery
2
1
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