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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
634
total RNA-seq
463
ChIP-seq
253
ATAC-seq
180
single cell RNA-seq
86
RNA microarray
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
828
Transcription
463
DNA binding
254
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
285
histone modification
284
histone
205
narrow histone mark
163
control
79
broad histone mark
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
222
August, 2021
207
August, 2017
195
October, 2019
193
May, 2020
159
February, 2021
120
July, 2018
92
February, 2023
65
July, 2019
65
May, 2022
47
September, 2023
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
25
November, 2017
23
February, 2020
22
May, 2019
16
April, 2019
16
October, 2017
14
May, 2023
12
December, 2017
11
October, 2018
9
April, 2020
9
November, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
January, 2018
1
January, 2019
Available data
1464
bam
1346
bigWig
968
bed narrowPeak
677
tsv
bigBed narrowPeak
331
fastq
230
tagAlign
210
bed broadPeak
198
bed bed3+
174
bigBed broadPeak
156
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1709
Homo sapiens
Biosample type
1710
tissue
921
primary cell
376
in vitro differentiated cells
307
cell line
10
stem cell
Organ
537
connective tissue
adipose tissue
432
pancreas
312
liver
225
heart
206
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
43
musculature of body
38
limb
17
nerve
16
skeleton
15
epithelium
12
spleen
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1633
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
891
GRCh38
847
hg19
Lab
1384
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
7
audit script error
Audit category:
11
missing controlled_by
assay_title!
snATAC-seq
files.file_type!
bigBed narrowPeak
organ_slims!
adipose tissue
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
1710 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
71
68
6
4
3
1
4
liver
167
107
20
1
1
3
1
1
1
kidney
49
9
75
64
1
1
bone element
84
bone tissue
58
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