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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
DNase-seq
84
RNA microarray
59
total RNA-seq
28
ChIP-seq
13
single cell RNA-seq
snATAC-seq
Assay category
171
DNA accessibility
72
Transcription
28
DNA binding
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
160
June, 2019
89
February, 2021
57
August, 2021
26
August, 2017
9
November, 2018
6
May, 2022
4
February, 2023
2
October, 2019
2
September, 2017
Available data
1820
bam
1702
bigWig
1062
tsv
884
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
199
bed bed3+
171
bigBed broadPeak
156
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
355
Homo sapiens
Biosample type
355
tissue
29
primary cell
28
in vitro differentiated cells
4
cell line
3
stem cell
Organ
130
kidney
88
bone element
36
limb
33
pancreas
32
musculature of body
27
brain
27
heart
18
ureter
6
adipose tissue
6
connective tissue
6
liver
5
blood vessel
vasculature
4
artery
4
skeleton
3
eye
2
nerve
1
spleen
Project
355
AMP
Genome assembly (visualization)
199
GRCh38
183
hg19
Lab
292
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
5
audit script error
Audit category:
14
missing controlled_by
assay_title!
snATAC-seq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
355 results
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DNase-seq
RNA microarray
total RNA-seq
ChIP-seq
single cell RNA-seq
tissue
bone element
84
kidney
13
49
13
islet of Langerhans
6
21
heart
18
muscle of arm
17
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