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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
587
total RNA-seq
280
ChIP-seq
252
ATAC-seq
174
single cell RNA-seq
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
777
Transcription
280
DNA binding
271
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
223
August, 2021
166
May, 2020
June, 2019
161
August, 2017
120
July, 2018
93
February, 2023
77
July, 2019
74
October, 2019
65
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
15
May, 2023
12
November, 2017
11
October, 2017
9
April, 2020
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
January, 2019
Available data
827
bam
644
bigWig
624
tsv
304
fastq
294
bed narrowPeak
86
bigBed narrowPeak
67
txt
64
xls
52
tagAlign
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
15
bed broadPeak
13
bigBed broadPeak
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
1412
Homo sapiens
Biosample type
1414
tissue
738
primary cell
528
cell line
256
in vitro differentiated cells
8
stem cell
Organ
417
pancreas
291
liver
197
kidney
191
heart
76
blood vessel
76
vasculature
69
adipose tissue
69
connective tissue
56
brain
51
artery
51
eye
35
limb
24
musculature of body
19
nerve
19
spleen
15
epithelium
10
lung
8
bone element
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1339
AMP
47
KPMP
19
T1D
9
LungMap
Genome assembly (visualization)
751
GRCh38
718
hg19
Lab
1123
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
9
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
2
audit script error
Audit category:
18
missing controlled_by
assay_title!
snATAC-seq
month_released!
February, 2021
June, 2019
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1414 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
292
20
68
6
4
3
1
1
1
4
liver
167
81
20
3
1
1
1
2
1
kidney
49
7
75
59
1
1
1
heart left ventricle
3
11
2
18
4
1
1
1
coronary artery
1
3
36
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