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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
280
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
snATAC-seq
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
442
DNA accessibility
280
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
624
histone modification
histone
320
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
166
May, 2020
163
June, 2019
161
August, 2017
120
July, 2018
93
February, 2023
77
July, 2019
74
October, 2019
65
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
37
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
15
May, 2023
12
November, 2017
11
October, 2017
9
April, 2020
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
January, 2019
Available data
1442
bam
1251
bigWig
1075
tsv
465
bed narrowPeak
304
fastq
249
bigBed narrowPeak
192
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
156
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2119
Homo sapiens
Biosample type
2121
tissue
794
primary cell
622
cell line
282
in vitro differentiated cells
6
stem cell
Organ
514
connective tissue
456
adipose tissue
421
pancreas
292
liver
273
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
56
musculature of body
54
eye
53
artery
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
2
intestine
2
thymus
1
adrenal gland
1
esophagus
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2046
AMP
47
KPMP
19
T1D
9
LungMap
Genome assembly (visualization)
1366
GRCh38
1317
hg19
Lab
1830
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
9
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
18
missing controlled_by
assay_title!
snATAC-seq
month_released!
March, 2023
organ_slims!
gonad
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2121 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
20
68
6
1
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
1
2
3
1
1
1
1
kidney
49
7
75
64
13
1
1
1
bone element
84
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