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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
599
ChIP-seq
252
ATAC-seq
180
single cell RNA-seq
178
DNase-seq
87
RNA microarray
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
599
DNA binding
434
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
322
narrow histone mark
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
211
August, 2017
203
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
93
February, 2023
77
July, 2019
65
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
15
May, 2023
October, 2017
9
April, 2020
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
Available data
1675
bam
1510
bigWig
1076
tsv
724
bed narrowPeak
356
bigBed narrowPeak
321
fastq
198
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
158
tagAlign
156
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2429
Homo sapiens
Biosample type
2433
tissue
910
primary cell
643
cell line
338
in vitro differentiated cells
9
stem cell
Organ
526
connective tissue
467
adipose tissue
448
pancreas
336
liver
283
kidney
256
heart
189
brain
158
bone element
97
blood vessel
97
vasculature
88
limb
65
musculature of body
59
artery
56
eye
27
nerve
20
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2356
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1608
GRCh38
1548
hg19
Lab
2128
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
21
missing controlled_by
Audit category:
3
inconsistent control read length
assay_title!
snATAC-seq
month_released!
October, 2017
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
2433 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
57
67
6
1
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
123
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
1
1
1
bone element
84
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